BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB005D12SP1|AL425375
(879 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1236 1677 0.0
>3x_Contig1236
Length = 4331
Score = 1677 bits (843), Expect = 0.0
Identities = 870/877 (99%), Gaps = 3/877 (0%)
Strand = Plus / Plus
Query: 2 aacgactcaccatgatatagaaaatgataacaattgtcgaactatataatgctttaaggt 61
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2235 aacgactcacca-gatatagaaaatga-aacaattgtcgaactatataatgctttaaggt 2292
Query: 62 catcacagccaagattccaaaaaattatcgaggaagaacacgatgacgatgaatttgtcc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2293 catcacagccaagattccaaaaaattatcgaggaagaacacgatgacgatgaatttgtcc 2352
Query: 122 aggatttactcaagttcaatgatacggtcaaccaattggttcaaaagtatgatttattga 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2353 aggatttactcaagttcaatgatacggtcaaccaattggttcaaaagtatgatttattga 2412
Query: 182 magcmggacatgctggtgaagcaaatcaaattaatgtcgataacatttcctcatctgtta 241
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2413 aagcaggacatgctggtgaagcaaatcaaattaatgtcgataacatttcctcatctgtta 2472
Query: 242 ataatggtggtgcgttaccaatgaaataaatttgattgattttgatgacgaagaagttaa 301
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2473 ataatggtggtgcgttagcaatgaaataaatttgattgattttgatgacgaagaagttaa 2532
Query: 302 taamagttcttcttcaaattctactgctgctgctgccagaaacaatttagaagatgacct 361
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2533 taaaagttcttcttcaaattctactgctgctgctgccagaaacaatttagaagatgacct 2592
Query: 362 gttgagcggtctgaatgacttgaatttctctgacaacaacaacaacaacaacaactttgg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2593 gttgagcggtctgaatgacttgaatttctctgacaacaacaacaacaacaacaactttgg 2652
Query: 422 atttgggggcagcatagccttggacacagcagctcatgcatctcctgccgtacctgttac 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2653 atttgggggcagcatagccttggacacagcagctcatgcatctcctgccgtacctgttac 2712
Query: 482 cacaactaccacaaccaactcaaatttcgatctgttgagtgatctatcatcaccatcacc 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2713 cacaactaccacaaccaactcaaatttcgatctgttgagtgatctatcatcaccatcacc 2772
Query: 542 tgtccaagctcaacaagatactcatagcaatgacttattgagtgagttttcagcaccagc 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2773 tgtccaagctcaacaagatactcatagcaatgacttattgagtgagttttcagcaccagc 2832
Query: 602 cgttcaacattctactcaaccttccatagtgtctgaccgtttccttgtaaaccagtcaga 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2833 cgttcaacattctactcaaccttccatagtgtctgaccgtttccttgtaaaccagtcaga 2892
Query: 662 tgttttgaagtttgaatttgcaatttctagagaatcagaaagcaccatcaaggtgacttc 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2893 tgttttgaagtttgaatttgcaatttctagagaatcagaaagcaccatcaaggtgacttc 2952
Query: 722 tttcttttcaaatgtgtcaatttcgcaacttacagaccttacattaatgctagcggttcc 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2953 tttcttttcaaatgtgtcaatttcgcaacttacagaccttacattaatgctagcggttcc 3012
Query: 782 taaagcccaacaatttgagacttttaccacaatcaaatactgttttgtcatcctatgcaa 841
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3013 taaagcccaacaa-ttgagacttttaccacaatcaaatactgttttgtcatcctatgcaa 3071
Query: 842 aggatggaatccatcaaaaaagttggattgataacgc 878
|||||||||||||||||||||||||||||||||||||
Sbjct: 3072 aggatggaatccatcaaaaaagttggattgataacgc 3108
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,151
Number of Sequences: 1807
Number of extensions: 10151
Number of successful extensions: 548
Number of sequences better than 1.0e-20: 1
length of query: 879
length of database: 10,358,551
effective HSP length: 16
effective length of query: 863
effective length of database: 10,329,639
effective search space: 8914478457
effective search space used: 8914478457
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.4 bits)
S2: 50 (100.0 bits)